Beyond Integer indexing

Faced an interesting problem recently

a : (B, S, T)
b : (B, C)  where 0 <= x[i, j] < S

What I want is an array of shape (B, C, T)

a = np.array(
   ...:    [[[0,1,2,3], 
   ...:      [4,5,6,7],
   ...:      [8,9,10,11]],
   ...:     [[0,1,2,3],
   ...:      [4,5,6,7],
   ...:      [8,9,10,11]]])

b = np.array(
   ...:    [[0,2,2],
   ...:     [1,0, 2]])

a.shape
Out[79]: (2, 3, 4)

b.shape
Out[80]: (2, 3)

What I expect is this

array([[[ 0,  1,  2,  3],
        [ 8,  9, 10, 11],
        [ 8,  9, 10, 11]],
       [[ 4,  5,  6,  7],
        [ 0,  1,  2,  3],
        [ 8,  9, 10, 11]]])

Note this is different from the typical scenario

Initially I hit some issues with integer index broadcasting. It seems it is possible to do it.

a[np.array([np.arange(2)]).T, b]

References:

• https://stackoverflow.com/questions/46124469/shape-mismatch-indexing-arrays-could-not-be-broadcast-together-with-shapes
• https://docs.scipy.org/doc/numpy-1.13.0/user/basics.indexing.html#indexing-multi-dimensional-arrays

PyTest live logging in PyCharm

PyTest does allow output to be ‘live printed’ 

Also, it possible to see logging output in PyTest

Checkout these two links:

• https://intellij-support.jetbrains.com/hc/en-us/community/posts/360007644040-Show-logging-output-when-using-pytest
• https://docs.pytest.org/en/latest/capture.html#setting-capturing-methods-or-disabling-capturing

Updating the transformers package

Few steps I follow each time i update the transformers package

git pull
pip install --upgrade .
pip install -r ./examples/requirements.txt

that’s

Latex multirow and column

Short and intuitive example

• https://texblog.org/2012/12/21/multi-column-and-multi-row-cells-in-latex-tables/

Numpy RuntimeWarning

Something I learns recently..

• NumPy has its own internal warning architecture on top of Pythons, which can be specifically controlled
• So, something Numpy will just produce a RuntimeWarning  without actually throwing an exception

Consider this:

probs = np.array([0.0, 1.0])
np.prod(probs)**(-1/len(probs))

Numpy produces a RuntimeWarning, not an exception

References:

• https://stackoverflow.com/questions/20161899/scipy-curve-fit-error-divide-by-zero-encountered
• https://stackoverflow.com/questions/10519237/python-how-to-avoid-numpy-runtimewarning-in-function-definition

Gradient accumulation in PyTorch

Need to understand:

• https://medium.com/huggingface/training-larger-batches-practical-tips-on-1-gpu-multi-gpu-distributed-setups-ec88c3e51255
• https://discuss.pytorch.org/t/why-do-we-need-to-set-the-gradients-manually-to-zero-in-pytorch/4903/20
• https://gist.github.com/thomwolf/ac7a7da6b1888c2eeac8ac8b9b05d3d3

 

tiling and repeating tensors

Repeat entire tensor:

• PyTorch:
  • https://pytorch.org/docs/stable/tensors.html#torch.Tensor.repeat

• Numpy:
  • https://numpy.org/doc/stable/reference/generated/numpy.tile.html?highlight=tile

Repeat elements of the tensor

• PyTorch:
  • https://pytorch.org/docs/stable/torch.html#torch.repeat_interleave
• Numpy:
  • https://numpy.org/doc/stable/reference/generated/numpy.repeat.html#numpy.repeat

 

pack_padded_sequence

Nice article on the use of pack_padded_sequence in Pytorch

https://suzyahyah.github.io/pytorch/2019/07/01/DataLoader-Pad-Pack-Sequence.html

 

Ignore tracked files

Often need to do this for appsettings.json files or Tests.runsettings files

Tip:

• https://stackoverflow.com/questions/10755655/git-ignore-tracked-files

 

Python output to JSON

I was recently working with multi-lingual data.

So it became essential to dump output in a format/language i could read, rather than random UTF-16 style

Tip:

• https://stackoverflow.com/questions/12309269/how-do-i-write-json-data-to-a-file